# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_USF1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/USF1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/USF1.fasta (Sat Feb 12 18:00:38 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.174 C 0.327 G 0.326 T 0.173


MOTIF CAYGTGAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAYGTGAC   GTCACRTG         87          3   1.9e-026   4.3e-023
#         CACGTGAC   GTCACGTG         67          2   3.2e-020   7.4e-017
#         CATGTGAC   GTCACATG         20          1   7.3e-006   1.7e-002

letter-probability matrix: alength= 4 w= 8 nsites= 87 E= 4.3e-023
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.770115 0.000000 0.229885
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATCACGTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCACGTG   CACGTGAT          7          0   7.5e-003   1.4e+001
#         ATCACGTG   CACGTGAT          7          0   7.5e-003   1.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATTGGCCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTGGCCA   TGGCCAAT          5          0   3.1e-002   5.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CATGTGGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATGTGGC   GCCACATG          5          0   3.1e-002   5.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.7e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATCACATG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCACATG   CATGTGAT          7          1   3.4e-002   6.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 6.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.93 seconds