# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_U2AF2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/U2AF2.fasta
#   positives: 68 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/U2AF2.fasta (Sat Feb 12 18:00:38 EST 2022)
#   negatives: 68 from shuffled positives
#        host: c23n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.349 C 0.155 G 0.170 T 0.326


MOTIF GAAAAGAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAAAGAA   TTCTTTTC          3          0   1.2e-001   1.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.0e+002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAGGACA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGGACA   TGTCCTTT          2          0   2.5e-001   2.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.0e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGAAATT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGAAATT   AATTTCTT          2          0   2.5e-001   2.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.0e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AATGTCAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATGTCAA   TTGACATT          2          0   2.5e-001   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACAGAATC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAGAATC   GATTCTGT          2          0   2.5e-001   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.31 seconds