# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_TSC22D4/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/TSC22D4.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/TSC22D4.fasta (Sat Feb 12 18:00:38 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.279 C 0.228 G 0.244 T 0.249


MOTIF CATCACCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATCACCA   TGGTGATG         24          6   5.1e-004   1.2e+000
#         CATCACCA   TGGTGATG         24          6   5.1e-004   1.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 1.2e+000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TCCATCCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCCATCCA   TGGATGGA         10          0   8.9e-004   2.0e+000
#         TCCATCCA   TGGATGGA         10          0   8.9e-004   2.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.0e+000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACTCATTC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTCATTC   GAATGAGT         10          1   5.4e-003   1.2e+001
#         ACTCATTC   GAATGAGT         10          1   5.4e-003   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACTAAAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTAAAAA   TTTTTAGT          5          0   3.1e-002   6.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.6e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTCACAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTCACAC   GTGTGAAT          5          0   3.1e-002   6.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.62 seconds