# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_TRIP13/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/TRIP13.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/TRIP13.fasta (Sat Feb 12 18:00:37 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.226 C 0.272 G 0.258 T 0.243


MOTIF ACAGGAAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAGGAAG   CTTCCTGT          9          0   1.8e-003   5.0e+000
#         ACAGGAAG   CTTCCTGT          9          0   1.8e-003   5.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.0e+000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCAATCAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAATCAG   CTGATTGG          9          0   1.8e-003   4.9e+000
#         CCAATCAG   CTGATTGG          9          0   1.8e-003   4.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.9e+000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GGAAGTGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGAAGTGA   TCACTTCC          9          1   1.0e-002   2.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.7e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CACATGAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACATGAC   GTCATGTG          6          0   1.5e-002   3.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.9e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCGGAAGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGGAAGC   GCTTCCGG          5          0   3.1e-002   7.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.67 seconds