# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_TRIM28/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/TRIM28.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/TRIM28.fasta (Sat Feb 12 18:00:37 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n12.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.274 C 0.222 G 0.228 T 0.276


MOTIF AARTCAGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AARTCAGC   GCTGAYTT         16          0   1.2e-005   3.2e-002
#         AAATCAGC   GCTGATTT          9          0   1.8e-003   4.8e+000
#         AAGTCAGC   GCTGACTT          7          0   7.5e-003   2.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 3.2e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.562500 0.000000 0.437500 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATTTCTCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTCTCA   TGAGAAAT          7          0   7.5e-003   1.9e+001
#         ATTTCTCA   TGAGAAAT          7          0   7.5e-003   1.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTTTCTGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTTTCTGA   TCAGAAAC          6          0   1.5e-002   3.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.9e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACAGCAGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAGCAGA   TCTGCTGT          5          0   3.1e-002   7.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGATAAGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGATAAGA   TCTTATCT          5          0   3.1e-002   7.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.76 seconds