# DREME 5.3.3 # command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_TEAD4/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/TEAD4.fasta # positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/TEAD4.fasta (Sat Feb 12 18:00:35 EST 2022) # negatives: 250 from shuffled positives # host: c28n02.farnam.hpc.yale.internal # when: Sat Feb 12 18:28:06 EST 2022 MEME version 5.3.3 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.276 C 0.229 G 0.236 T 0.258 MOTIF CTTATCTC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CTTATCTC GAGATAAG 7 0 7.5e-003 2.1e+001 # CTTATCTC GAGATAAG 7 0 7.5e-003 2.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.1e+001 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAGATAAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CAGATAAA TTTATCTG 5 0 3.1e-002 8.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.6e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AATGATAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AATGATAA TTATCATT 4 0 6.2e-002 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAGATGGA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CAGATGGA TCCATCTG 4 0 6.2e-002 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AACACAGC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AACACAGC GCTGTGTT 3 0 1.2e-001 3.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.4e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: target motif count reached # Running time: 1.26 seconds