# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_TCF7L2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/TCF7L2.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/TCF7L2.fasta (Sat Feb 12 18:00:34 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.193 C 0.306 G 0.297 T 0.203


MOTIF CTTCAAAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTCAAAG   CTTTGAAG          9          0   1.8e-003   5.2e+000
#         CTTCAAAG   CTTTGAAG          9          0   1.8e-003   5.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.2e+000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACATCAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACATCAAA   TTTGATGT          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAGCCGCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAGCCGCC   GGCGGCTC          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCCGCCGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCGCCGC   GCGGCGGC          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGGGGGAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGGGGGAG   CTCCCCCG          5          1   1.1e-001   3.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.0e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.75 seconds