# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_TCF7/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/TCF7.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/TCF7.fasta (Sat Feb 12 18:00:34 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.254 C 0.258 G 0.244 T 0.244


MOTIF ACWTCAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACWTCAAA   TTTGAWGT         27          1   5.4e-008   1.5e-004
#         ACTTCAAA   TTTGAAGT         18          1   2.9e-005   7.9e-002
#         ACATCAAA   TTTGATGT          9          0   1.8e-003   5.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.5e-004
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.333333 0.000000 0.000000 0.666667
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGATCAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGATCAAA   TTTGATCT         13          0   1.0e-004   2.7e-001
#         AGATCAAA   TTTGATCT         13          0   1.0e-004   2.7e-001

letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.7e-001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGCCACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGCCACA   TGTGGCTT          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGCAGCAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCAGCAG   CTGCTGCT          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATCAAAGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCAAAGG   CCTTTGAT          4          0   6.2e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.68 seconds