# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_TAF1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/TAF1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/TAF1.fasta (Sat Feb 12 18:00:33 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:10 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.174 C 0.319 G 0.331 T 0.176


MOTIF ARATGGCG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ARATGGCG   CGCCATYT         29          0   7.9e-010   2.1e-006
#         AGATGGCG   CGCCATCT         21          0   3.1e-007   8.1e-004
#         AAATGGCG   CGCCATTT          8          0   3.7e-003   9.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.1e-006
1.000000 0.000000 0.000000 0.000000
0.275862 0.000000 0.724138 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCGCCGCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGCCGCC   GGCGGCGG          7          0   7.5e-003   1.9e+001
#         CCGCCGCC   GGCGGCGG          7          0   7.5e-003   1.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.9e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCGCCTCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGCCTCC   GGAGGCGG          5          0   3.1e-002   7.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.7e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTCTGCTC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCTGCTC   GAGCAGAG          4          0   6.2e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTTCCGGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTCCGGC   GCCGGAAG          5          1   1.1e-001   2.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.6e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.52 seconds