# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_SUZ12/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/SUZ12.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/SUZ12.fasta (Sat Feb 12 18:00:32 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.190 C 0.314 G 0.315 T 0.181


MOTIF GRACTACA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GRACTACA   TGTAGTYC         15          0   2.5e-005   6.8e-002
#         GAACTACA   TGTAGTTC          8          0   3.7e-003   1.0e+001
#         GGACTACA   TGTAGTCC          7          0   7.5e-003   2.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 6.8e-002
0.000000 0.000000 1.000000 0.000000
0.533333 0.000000 0.466667 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAACTACA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACTACA   TGTAGTTT          5          0   3.1e-002   8.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TCCCAGCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCCCAGCA   TGCTGGGA          5          0   3.1e-002   8.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.2e+001
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGACTACA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGACTACA   TGTAGTCT          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TCTGGGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCTGGGAA   TTCCCAGA          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.69 seconds