# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_STAT1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/STAT1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/STAT1.fasta (Sat Feb 12 18:00:32 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n12.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.232 C 0.270 G 0.249 T 0.249


MOTIF TCCDGGAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCCDGGAA   TTCCHGGA         24          2   3.2e-006   8.5e-003
#         TCCAGGAA   TTCCTGGA         12          1   1.5e-003   4.0e+000
#         TCCGGGAA   TTCCCGGA         12          1   1.5e-003   4.0e+000
#         TCCTGGAA   TTCCAGGA         11          1   2.9e-003   7.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 8.5e-003
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.250000 0.000000 0.500000 0.250000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAAACTGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAACTGA   TCAGTTTC         11          1   2.9e-003   7.4e+000
#         GAAACTGA   TCAGTTTC         11          1   2.9e-003   7.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 7.4e+000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTGGGAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGGGAAA   TTTCCCAG          7          0   7.5e-003   1.9e+001
#         CTGGGAAA   TTTCCCAG          7          0   7.5e-003   1.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.9e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGGGGAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGGGGAAA   TTTCCCCA          5          0   3.1e-002   7.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.5e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGGGGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGGGGAA   TTCCCCTT          4          0   6.2e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.82 seconds