# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_SRSF9/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/SRSF9.fasta
#   positives: 14 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/SRSF9.fasta (Sat Feb 12 18:00:31 EST 2022)
#   negatives: 14 from shuffled positives
#        host: c22n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:43 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.359 C 0.190 G 0.208 T 0.243


MOTIF AAATAGGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATAGGA   TCCTATTT          2          0   2.4e-001   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTTTGTGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTTTGTGA   TCACAAAC          2          0   2.4e-001   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.8e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAATAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAATAC   GTATTTTT          1          0   5.0e-001   6.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 6.7e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAACCTA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACCTA   TAGGTTTT          1          0   5.0e-001   6.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 6.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAACAAGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACAAGC   GCTTGTTT          1          0   5.0e-001   5.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 5.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.14 seconds