# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_SRSF7/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/SRSF7.fasta
#   positives: 104 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/SRSF7.fasta (Sat Feb 12 18:00:31 EST 2022)
#   negatives: 104 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.142 C 0.357 G 0.363 T 0.139


MOTIF CCGCCGGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGCCGGC   GCCGGCGG          4          0   6.1e-002   7.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 7.3e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGGGGCCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGGGGCCC   GGGCCCCG          4          0   6.1e-002   7.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 7.1e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCGGCCGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGGCCGG   CCGGCCGG          3          0   1.2e-001   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.4e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CGGCTCCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGGCTCCC   GGGAGCCG          3          0   1.2e-001   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.4e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTCCGCCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCCGCCC   GGGCGGAG          3          0   1.2e-001   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.4e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.54 seconds