# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_SMARCE1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/SMARCE1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/SMARCE1.fasta (Sat Feb 12 18:00:29 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:10 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.271 C 0.234 G 0.227 T 0.268


MOTIF TGASTCAB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGASTCAB   VTGASTCA         45          0   3.2e-015   8.7e-012
#         TGAGTCAT   ATGACTCA         19          0   1.3e-006   3.6e-003
#         TGACTCAC   GTGAGTCA         17          0   5.8e-006   1.6e-002
#         TGACTCAT   ATGAGTCA         17          0   5.8e-006   1.6e-002
#         TGAGTCAC   GTGACTCA         17          0   5.8e-006   1.6e-002
#         TGACTCAG   CTGAGTCA          7          0   7.5e-003   2.0e+001
#         TGAGTCAG   CTGACTCA          7          0   7.5e-003   2.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 8.7e-012
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.533333 0.466667 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.377778 0.200000 0.422222


MOTIF AGAGATAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGATAA   TTATCTCT          6          0   1.5e-002   3.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGAAGAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGAAGAT   ATCTTCTT          4          0   6.2e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AGGCTGAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGCTGAG   CTCAGCCT          4          0   6.2e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGTGATAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGATAA   TTATCACT          4          0   6.2e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.64 seconds