# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_SMARCC2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/SMARCC2.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/SMARCC2.fasta (Sat Feb 12 18:00:29 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:43 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.268 C 0.225 G 0.234 T 0.273


MOTIF TGASTCAB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGASTCAB   VTGASTCA         33          1   7.0e-010   2.0e-006
#         TGAGTCAT   ATGACTCA         15          1   2.1e-004   6.1e-001
#         TGACTCAT   ATGAGTCA         10          0   8.9e-004   2.5e+000
#         TGACTCAC   GTGAGTCA          9          0   1.8e-003   5.2e+000
#         TGAGTCAC   GTGACTCA          9          0   1.8e-003   5.2e+000
#         TGAGTCAG   CTGACTCA          8          0   3.7e-003   1.1e+001
#         TGACTCAG   CTGAGTCA         10          1   5.4e-003   1.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 2.0e-006
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.515152 0.484848 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.363636 0.333333 0.303030


MOTIF GATAAGCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GATAAGCA   TGCTTATC          7          0   7.5e-003   2.0e+001
#         GATAAGCA   TGCTTATC          7          0   7.5e-003   2.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.0e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGATAAGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGATAAGG   CCTTATCT          5          0   3.1e-002   7.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAGACAGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGACAGA   TCTGTCTT          3          0   1.2e-001   3.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGATAAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGATAAG   CTTATCTT          3          0   1.2e-001   3.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.69 seconds