# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_SMARCA5/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/SMARCA5.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/SMARCA5.fasta (Sat Feb 12 18:00:28 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n12.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.232 C 0.262 G 0.268 T 0.238


MOTIF CACACAGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACACAGC   GCTGTGTG         11          1   2.9e-003   7.8e+000
#         CACACAGC   GCTGTGTG         11          1   2.9e-003   7.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 7.8e+000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAACTGAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACTGAG   CTCAGTTT          8          0   3.7e-003   9.7e+000
#         AAACTGAG   CTCAGTTT          8          0   3.7e-003   9.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.7e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF TCTGTGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCTGTGAA   TTCACAGA          6          0   1.5e-002   3.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.9e+001
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCTCCTCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTCCTCC   GGAGGAGG          8          1   1.9e-002   4.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAATGGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATGGG   CCCATTTT          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.82 seconds