# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_SMAD2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/SMAD2.fasta
#   positives: 100 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/SMAD2.fasta (Sat Feb 12 18:00:27 EST 2022)
#   negatives: 100 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.190 C 0.319 G 0.291 T 0.200


MOTIF ACCAGAGG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCAGAGG   CCTCTGGT          3          0   1.2e-001   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCAGCAGG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAGCAGG   CCTGCTGG          3          0   1.2e-001   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.4e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCCCGGCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCCGGCA   TGCCGGGG          3          0   1.2e-001   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.4e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCTGGGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTGGGAA   TTCCCAGG          3          0   1.2e-001   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.4e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCAGACCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCAGACCC   GGGTCTGC          3          0   1.2e-001   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.4e+002
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.49 seconds