# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_SIX5/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/SIX5.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/SIX5.fasta (Sat Feb 12 18:00:27 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n08.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.196 C 0.315 G 0.307 T 0.181


MOTIF GRACTACA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GRACTACA   TGTAGTYC         14          0   5.1e-005   1.4e-001
#         GAACTACA   TGTAGTTC          7          0   7.5e-003   2.1e+001
#         GGACTACA   TGTAGTCC          7          0   7.5e-003   2.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.4e-001
0.000000 0.000000 1.000000 0.000000
0.500000 0.000000 0.500000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACATGGCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACATGGCC   GGCCATGT          5          0   3.1e-002   8.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCGAGGGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGAGGGC   GCCCTCGG          5          0   3.1e-002   8.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.1e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCTGGGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCTGGGAA   TTCCCAGC          5          0   3.1e-002   8.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.1e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGAACTAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAACTAC   GTAGTTCT          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.70 seconds