# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_SIN3A/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/SIN3A.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/SIN3A.fasta (Sat Feb 12 18:00:27 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.163 C 0.331 G 0.344 T 0.163


MOTIF GACAGCKC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GACAGCKC   GMGCTGTC         17          0   5.8e-006   1.5e-002
#         GACAGCGC   GCGCTGTC          9          0   1.8e-003   4.6e+000
#         GACAGCTC   GAGCTGTC          8          0   3.7e-003   9.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.5e-002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.529412 0.470588
0.000000 1.000000 0.000000 0.000000


MOTIF GGTGCTGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTGCTGA   TCAGCACC         10          0   8.9e-004   2.2e+000
#         GGTGCTGA   TCAGCACC         10          0   8.9e-004   2.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.2e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAGCTGGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGCTGGG   CCCAGCTG          9          0   1.8e-003   4.4e+000
#         CAGCTGGG   CCCAGCTG          9          0   1.8e-003   4.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.4e+000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AACAGCTG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAGCTG   CAGCTGTT          7          0   7.5e-003   1.8e+001
#         AACAGCTG   CAGCTGTT          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCCCGCCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCCGCCC   GGGCGGGG          6          0   1.5e-002   3.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.6e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.67 seconds