# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_SFPQ/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/SFPQ.fasta
#   positives: 114 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/SFPQ.fasta (Sat Feb 12 18:00:26 EST 2022)
#   negatives: 114 from shuffled positives
#        host: c22n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.221 C 0.295 G 0.268 T 0.216


MOTIF AGCGTAGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCGTAGC   GCTACGCT          3          0   1.2e-001   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCAGCTCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAGCTCC   GGAGCTGG          3          0   1.2e-001   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.7e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGCTCGCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCTCGCC   GGCGAGCG          3          0   1.2e-001   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.7e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAATAAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATAAC   GTTATTTT          2          0   2.5e-001   3.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAGAAAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGAAAA   TTTTCTTT          2          0   2.5e-001   3.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.37 seconds