# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_SETDB1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/SETDB1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/SETDB1.fasta (Sat Feb 12 18:00:26 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:10 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.225 C 0.267 G 0.277 T 0.230


MOTIF ACTTCTGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTTCTGC   GCAGAAGT         11          0   4.4e-004   1.1e+000
#         ACTTCTGC   GCAGAAGT         11          0   4.4e-004   1.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.1e+000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CAAGGCAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAAGGCAA   TTGCCTTG          9          0   1.8e-003   4.4e+000
#         CAAGGCAA   TTGCCTTG          9          0   1.8e-003   4.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.4e+000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGGGTGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGGGTGC   GCACCCTT          7          0   7.5e-003   1.8e+001
#         AAGGGTGC   GCACCCTT          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGAGGAGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGGAGC   GCTCCTCT          7          0   7.5e-003   1.8e+001
#         AGAGGAGC   GCTCCTCT          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGCCCTCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCCCTCA   TGAGGGCT          7          0   7.5e-003   1.8e+001
#         AGCCCTCA   TGAGGGCT          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.67 seconds