# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_SAFB2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/SAFB2.fasta
#   positives: 41 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/SAFB2.fasta (Sat Feb 12 18:00:26 EST 2022)
#   negatives: 41 from shuffled positives
#        host: c28n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:10 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.251 C 0.250 G 0.214 T 0.285


MOTIF AAAAAAAT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAAAT   ATTTTTTT          2          0   2.5e-001   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ACTATAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTATAAA   TTTATAGT          2          0   2.5e-001   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTTTTAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTTTAA   TTAAAAAT          2          0   2.5e-001   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAGCCGCG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGCCGCG   CGCGGCTG          2          0   2.5e-001   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CGCGGCCG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCGGCCG   CGGCCGCG          2          0   2.5e-001   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.1e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.30 seconds