# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_REST/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/REST.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/REST.fasta (Sat Feb 12 18:00:25 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.184 C 0.307 G 0.312 T 0.197


MOTIF RGTGCTGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RGTGCTGA   TCAGCACY         82          1   3.5e-027   5.7e-024
#         GGTGCTGA   TCAGCACC         73          1   9.6e-024   1.6e-020
#         AGTGCTGA   TCAGCACT          9          0   1.8e-003   2.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 5.7e-024
0.109756 0.000000 0.890244 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCTGTCCR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCTGTCCR   YGGACAGC         83          3   6.4e-025   8.2e-022
#         GCTGTCCA   TGGACAGC         50          1   1.7e-015   2.2e-012
#         GCTGTCCG   CGGACAGC         33          2   6.7e-009   8.7e-006

letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 8.2e-022
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.602410 0.000000 0.397590 0.000000


MOTIF AVGGACAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AVGGACAG   CTGTCCBT         24          0   3.3e-008   3.5e-005
#         AGGGACAG   CTGTCCCT          9          0   1.8e-003   1.9e+000
#         AAGGACAG   CTGTCCTT          8          0   3.7e-003   3.9e+000
#         ACGGACAG   CTGTCCGT          7          0   7.5e-003   7.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 3.5e-005
1.000000 0.000000 0.000000 0.000000
0.333333 0.291667 0.375000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACCMTGGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCMTGGA   TCCAKGGT         25          1   2.2e-007   2.3e-004
#         ACCATGGA   TCCATGGT         16          1   1.1e-004   1.1e-001
#         ACCCTGGA   TCCAGGGT          9          0   1.8e-003   1.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 2.3e-004
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.640000 0.360000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACCTTGGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCTTGGA   TCCAAGGT          6          0   1.5e-002   1.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.83 seconds