# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_RELA/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/RELA.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/RELA.fasta (Sat Feb 12 18:00:24 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.265 C 0.252 G 0.227 T 0.257


MOTIF ACTCCATC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTCCATC   GATGGAGT         30          0   3.7e-010   8.3e-007
#         ACTCCATC   GATGGAGT         30          0   3.7e-010   8.3e-007

letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 8.3e-007
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AACCAGAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACCAGAG   CTCTGGTT         22          0   1.5e-007   3.3e-004
#         AACCAGAG   CTCTGGTT         22          0   1.5e-007   3.3e-004

letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 3.3e-004
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CTCTGACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCTGACA   TGTCAGAG         13          0   1.0e-004   2.3e-001
#         CTCTGACA   TGTCAGAG         13          0   1.0e-004   2.3e-001

letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.3e-001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTATTCAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTATTCAA   TTGAATAG         12          0   2.1e-004   4.5e-001
#         CTATTCAA   TTGAATAG         12          0   2.1e-004   4.5e-001

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.5e-001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACGCCTC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACGCCTC   GAGGCGTT          7          0   7.5e-003   1.6e+001
#         AACGCCTC   GAGGCGTT          7          0   7.5e-003   1.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.6e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.97 seconds