# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_RBM25/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/RBM25.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/RBM25.fasta (Sat Feb 12 18:00:24 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:07 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.210 C 0.288 G 0.305 T 0.197


MOTIF AGGTCACA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGTCACA   TGTGACCT         11          0   4.4e-004   1.1e+000
#         AGGTCACA   TGTGACCT         11          0   4.4e-004   1.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.1e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAACTGAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACTGAG   CTCAGTTT          9          0   1.8e-003   4.7e+000
#         AAACTGAG   CTCAGTTT          9          0   1.8e-003   4.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.7e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GAGGTTAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAGGTTAA   TTAACCTC          8          0   3.7e-003   9.3e+000
#         GAGGTTAA   TTAACCTC          8          0   3.7e-003   9.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.3e+000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGCCAATG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCCAATG   CATTGGCT          7          0   7.5e-003   1.9e+001
#         AGCCAATG   CATTGGCT          7          0   7.5e-003   1.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CAATGGGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAATGGGG   CCCCATTG          5          0   3.1e-002   7.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.5e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.72 seconds