# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_RBM17/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/RBM17.fasta
#   positives: 23 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/RBM17.fasta (Sat Feb 12 18:00:23 EST 2022)
#   negatives: 23 from shuffled positives
#        host: c28n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:09 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.237 C 0.246 G 0.291 T 0.226


MOTIF AACAGTCT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAGTCT   AGACTGTT          2          0   2.4e-001   7.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 7.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF GCCCAGCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCCAGCC   GGCTGGGC          2          0   2.4e-001   6.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.7e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAATAAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATAAC   GTTATTTT          1          0   5.0e-001   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 1.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAATGTC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATGTC   GACATTTT          1          0   5.0e-001   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAACAAGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACAAGC   GCTTGTTT          1          0   5.0e-001   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.50 seconds