# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_RBM15/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/RBM15.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/RBM15.fasta (Sat Feb 12 18:00:23 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:59 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.138 C 0.365 G 0.365 T 0.132


MOTIF GCCCGGCC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCCGGCC   GGCCGGGC          9          1   1.0e-002   2.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.6e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCAGAGGG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAGAGGG   CCCTCTGG          5          0   3.1e-002   7.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GCGCGGCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGCGGCC   GGCCGCGC          5          0   3.1e-002   7.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.7e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCGGCTCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGGCTCC   GGAGCCGG          7          1   3.4e-002   8.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 8.4e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGAGGAGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGGAGC   GCTCCTCT          4          0   6.2e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.78 seconds