# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_RAD51/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/RAD51.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/RAD51.fasta (Sat Feb 12 18:00:22 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:00 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.199 C 0.288 G 0.301 T 0.212


MOTIF CAYGTGAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAYGTGAC   GTCACRTG         53          3   2.6e-014   6.3e-011
#         CACGTGAC   GTCACGTG         44          3   2.0e-011   4.9e-008
#         CATGTGAC   GTCACATG          9          0   1.8e-003   4.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 6.3e-011
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.833333 0.000000 0.166667
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAGCAAGT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGCAAGT   ACTTGCTT          6          0   1.5e-002   3.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.4e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ACGTGATC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGTGATC   GATCACGT          6          0   1.5e-002   3.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATTGGCCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTGGCCA   TGGCCAAT          6          0   1.5e-002   3.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCCCTGTC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCCTGTC   GACAGGGG          6          0   1.5e-002   3.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.3e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.78 seconds