# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_PTTG1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/PTTG1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/PTTG1.fasta (Sat Feb 12 18:00:20 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:04 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.276 C 0.225 G 0.234 T 0.265


MOTIF ARATGGAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ARATGGAG   CTCCATYT         62          0   2.9e-021   5.1e-018
#         AGATGGAG   CTCCATCT         44          0   7.1e-015   1.3e-011
#         AAATGGAG   CTCCATTT         18          0   2.8e-006   5.0e-003

letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 5.1e-018
1.000000 0.000000 0.000000 0.000000
0.290323 0.000000 0.709677 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AACCAGAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACCAGAG   CTCTGGTT         38          0   7.9e-013   1.3e-009
#         AACCAGAG   CTCTGGTT         38          0   7.9e-013   1.3e-009

letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 1.3e-009
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCTCTGAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTCTGAC   GTCAGAGG         14          1   4.2e-004   6.7e-001
#         CCTCTGAC   GTCAGAGG         14          1   4.2e-004   6.7e-001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 6.7e-001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCTATTCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTATTCA   TGAATAGG          8          0   3.7e-003   5.7e+000
#         CCTATTCA   TGAATAGG          8          0   3.7e-003   5.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 5.7e+000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAACTCCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAACTCCA   TGGAGTTG          7          0   7.5e-003   1.2e+001
#         CAACTCCA   TGGAGTTG          7          0   7.5e-003   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.2e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.59 seconds