# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_POU5F1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/POU5F1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/POU5F1.fasta (Sat Feb 12 18:00:19 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.170 C 0.333 G 0.328 T 0.169


MOTIF ACGGCGGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGGCGGC   GCCGCCGT          6          0   1.5e-002   4.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGGACAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGGACAAA   TTTGTCCC          6          0   1.5e-002   4.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.1e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCTGCGCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTGCGCA   TGCGCAGG          5          0   3.1e-002   8.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.2e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CATGCGCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATGCGCA   TGCGCATG          7          1   3.4e-002   9.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 9.0e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGGGAGCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGGAGCC   GGCTCCCT          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.82 seconds