# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_NUFIP1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/NUFIP1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/NUFIP1.fasta (Sat Feb 12 18:00:16 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.220 C 0.264 G 0.261 T 0.256


MOTIF AAGATGGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGATGGA   TCCATCTT         10          0   8.9e-004   2.5e+000
#         AAGATGGA   TCCATCTT         10          0   8.9e-004   2.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.5e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACCAGAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACCAGAG   CTCTGGTT          8          0   3.7e-003   1.0e+001
#         AACCAGAG   CTCTGGTT          8          0   3.7e-003   1.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.0e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACGCCTCT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGCCTCT   AGAGGCGT          5          0   3.1e-002   8.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF CCTCCCTC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTCCCTC   GAGGGAGG          6          1   6.1e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.7e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGCCTTAT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCCTTAT   ATAAGGCT          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 0.72 seconds