# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_NR4A1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/NR4A1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/NR4A1.fasta (Sat Feb 12 18:00:15 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.266 C 0.231 G 0.237 T 0.266


MOTIF ACTCCATY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTCCATY   RATGGAGT         52          0   1.1e-017   2.3e-014
#         ACTCCATC   GATGGAGT         45          0   3.2e-015   6.5e-012
#         ACTCCATT   AATGGAGT          7          0   7.5e-003   1.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 2.3e-014
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.865385 0.000000 0.134615


MOTIF ACCAGAGY DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCAGAGY   RCTCTGGT         30          0   3.7e-010   7.1e-007
#         ACCAGAGC   GCTCTGGT         19          0   1.3e-006   2.6e-003
#         ACCAGAGT   ACTCTGGT         11          0   4.4e-004   8.4e-001

letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 7.1e-007
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.633333 0.000000 0.366667


MOTIF CTCTGACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCTGACA   TGTCAGAG         16          0   1.2e-005   2.2e-002
#         CTCTGACA   TGTCAGAG         16          0   1.2e-005   2.2e-002

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.2e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAAGATGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAAGATGG   CCATCTTG         10          0   8.9e-004   1.6e+000
#         CAAGATGG   CCATCTTG         10          0   8.9e-004   1.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.6e+000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF TGGGTAAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGGGTAAA   TTTACCCA          9          0   1.8e-003   3.2e+000
#         TGGGTAAA   TTTACCCA          9          0   1.8e-003   3.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.2e+000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.66 seconds