# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_NR2F6/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/NR2F6.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/NR2F6.fasta (Sat Feb 12 18:00:15 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.244 C 0.256 G 0.248 T 0.253


MOTIF ARAGGTCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ARAGGTCA   TGACCTYT         30          0   3.7e-010   9.7e-007
#         AAAGGTCA   TGACCTTT         18          0   2.8e-006   7.3e-003
#         AGAGGTCA   TGACCTCT         12          0   2.1e-004   5.6e-001

letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 9.7e-007
1.000000 0.000000 0.000000 0.000000
0.600000 0.000000 0.400000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGGTCACT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGTCACT   AGTGACCT          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATGACCTC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGACCTC   GAGGTCAT          4          0   6.2e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACCTTTGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCTTTGA   TCAAAGGT          5          1   1.1e-001   2.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAGGGCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGGGCA   TGCCCTTT          3          0   1.2e-001   3.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.0e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.73 seconds