# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_NR2C2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/NR2C2.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/NR2C2.fasta (Sat Feb 12 18:00:13 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.179 C 0.311 G 0.315 T 0.195


MOTIF CCCGGAAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCGGAAG   CTTCCGGG         14          0   5.1e-005   1.4e-001
#         CCCGGAAG   CTTCCGGG         14          0   5.1e-005   1.4e-001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.4e-001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCTCTGAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTCTGAC   GTCAGAGG          8          0   3.7e-003   9.9e+000
#         CCTCTGAC   GTCAGAGG          8          0   3.7e-003   9.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.9e+000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGCCGCCG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCCGCCG   CGGCGGCG          6          0   1.5e-002   4.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.0e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CGCTCGGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCTCGGC   GCCGAGCG          6          0   1.5e-002   4.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.0e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCGGAAGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGGAAGC   GCTTCCGG          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.98 seconds