# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_NR2C1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/NR2C1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/NR2C1.fasta (Sat Feb 12 18:00:13 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.200 C 0.292 G 0.301 T 0.206


MOTIF AGAGGTCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGGTCA   TGACCTCT         11          0   4.4e-004   1.1e+000
#         AGAGGTCA   TGACCTCT         11          0   4.4e-004   1.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.1e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCCGGAAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCGGAAG   CTTCCGGG         11          1   2.9e-003   7.5e+000
#         CCCGGAAG   CTTCCGGG         11          1   2.9e-003   7.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 7.5e+000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAGGGTCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGGGTCA   TGACCCTT         10          1   5.4e-003   1.4e+001
#         AAGGGTCA   TGACCCTT         10          1   5.4e-003   1.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.4e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGGGGTCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGGGGTCA   TGACCCCG          6          0   1.5e-002   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGGTCAGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGTCAGA   TCTGACCT          8          1   1.9e-002   4.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.6e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.95 seconds