# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_NFYA/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/NFYA.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/NFYA.fasta (Sat Feb 12 18:00:12 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:07 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.212 C 0.303 G 0.285 T 0.200


MOTIF AGCCAATS DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCCAATS   SATTGGCT         19          0   1.3e-006   3.6e-003
#         AGCCAATG   CATTGGCT         11          0   4.4e-004   1.2e+000
#         AGCCAATC   GATTGGCT          8          0   3.7e-003   1.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 3.6e-003
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.421053 0.578947 0.000000


MOTIF ACCAATCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCAATCA   TGATTGGT          8          0   3.7e-003   9.7e+000
#         ACCAATCA   TGATTGGT          8          0   3.7e-003   9.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.7e+000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGAGGCGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGGCGG   CCGCCTCT          6          0   1.5e-002   3.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CAGCCAAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGCCAAC   GTTGGCTG          6          0   1.5e-002   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.8e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCAATGAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAATGAG   CTCATTGG          6          0   1.5e-002   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.74 seconds