# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_NFXL1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/NFXL1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/NFXL1.fasta (Sat Feb 12 18:00:12 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.195 C 0.312 G 0.297 T 0.195


MOTIF GGAGGAGB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGAGGAGB   VCTCCTCC         80         10   1.4e-017   2.8e-014
#         GGAGGAGG   CCTCCTCC         64          7   1.5e-014   3.0e-011
#         GGAGGAGC   GCTCCTCC         16          3   1.9e-003   3.7e+000
#         GGAGGAGT   ACTCCTCC          8          0   3.7e-003   7.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 2.8e-014
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.192771 0.722892 0.084337


MOTIF GGGAGCAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGGAGCAC   GTGCTCCC         10          1   5.4e-003   9.8e+000
#         GGGAGCAC   GTGCTCCC         10          1   5.4e-003   9.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 9.8e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTTCCTCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTCCTCC   GGAGGAAG         14          5   2.9e-002   5.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 5.2e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTCCTTCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCCTTCC   GGAAGGAG          6          0   1.5e-002   2.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.6e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTCCCCAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCCCCAC   GTGGGGAG          4          0   6.2e-002   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.1e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.56 seconds