# DREME 5.3.3 # command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_NFIC/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/NFIC.fasta # positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/NFIC.fasta (Sat Feb 12 18:00:11 EST 2022) # negatives: 250 from shuffled positives # host: c28n03.farnam.hpc.yale.internal # when: Sat Feb 12 18:28:03 EST 2022 MEME version 5.3.3 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.223 C 0.267 G 0.264 T 0.246 MOTIF CYTGGCAC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CYTGGCAC GTGCCARG 20 0 6.4e-007 1.5e-003 # CTTGGCAC GTGCCAAG 11 0 4.4e-004 1.0e+000 # CCTGGCAC GTGCCAGG 9 0 1.8e-003 4.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.5e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.450000 0.000000 0.550000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGYTGGCA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AGYTGGCA TGCCARCT 25 2 1.6e-006 3.8e-003 # AGCTGGCA TGCCAGCT 13 0 1.0e-004 2.4e-001 # AGTTGGCA TGCCAACT 12 2 5.9e-003 1.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 3.8e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.520000 0.000000 0.480000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCCAAAAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GCCAAAAA TTTTTGGC 10 0 8.9e-004 1.9e+000 # GCCAAAAA TTTTTGGC 10 0 8.9e-004 1.9e+000 letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.9e+000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGCCAGAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST TGCCAGAA TTCTGGCA 7 0 7.5e-003 1.6e+001 # TGCCAGAA TTCTGGCA 7 0 7.5e-003 1.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.6e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CATGCCAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CATGCCAA TTGGCATG 9 1 1.0e-002 2.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.1e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: target motif count reached # Running time: 0.69 seconds