# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_NFE2L1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/NFE2L1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/NFE2L1.fasta (Sat Feb 12 18:00:10 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:00 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.277 C 0.219 G 0.222 T 0.282


MOTIF RTGACTCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RTGACTCA   TGAGTCAY         75          3   6.0e-022   1.3e-018
#         ATGACTCA   TGAGTCAT         58          3   5.5e-016   1.2e-012
#         GTGACTCA   TGAGTCAC         17          0   5.8e-006   1.3e-002

letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 1.3e-018
0.773333 0.000000 0.226667 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AWTGCTGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AWTGCTGA   TCAGCAWT         15          0   2.5e-005   4.9e-002
#         ATTGCTGA   TCAGCAAT          8          0   3.7e-003   7.3e+000
#         AATGCTGA   TCAGCATT          7          0   7.5e-003   1.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 4.9e-002
1.000000 0.000000 0.000000 0.000000
0.466667 0.000000 0.000000 0.533333
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGAGTCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGAGTCA   TGACTCAT          7          0   7.5e-003   1.4e+001
#         ATGAGTCA   TGACTCAT          7          0   7.5e-003   1.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAATTCCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAATTCCA   TGGAATTG          7          0   7.5e-003   1.4e+001
#         CAATTCCA   TGGAATTG          7          0   7.5e-003   1.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.4e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATTCTAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTCTAC   GTAGAATT          5          0   3.1e-002   5.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.7e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.80 seconds