# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_NFE2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/NFE2.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/NFE2.fasta (Sat Feb 12 18:00:10 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.251 C 0.245 G 0.236 T 0.268


MOTIF CTGASTCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGASTCA   TGASTCAG         81          1   8.6e-027   1.9e-023
#         CTGAGTCA   TGACTCAG         69          1   3.0e-022   6.7e-019
#         CTGACTCA   TGAGTCAG         13          0   1.0e-004   2.4e-001

letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 1.9e-023
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.158537 0.841463 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTGTGTCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGTGTCA   TGACACAG          7          0   7.5e-003   1.5e+001
#         CTGTGTCA   TGACACAG          7          0   7.5e-003   1.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.5e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTGAATCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGAATCA   TGATTCAG          6          0   1.5e-002   3.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.0e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACTCAGCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTCAGCA   TGCTGAGT          5          0   3.1e-002   5.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGTCATGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTCATGC   GCATGACT          5          0   3.1e-002   5.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.63 seconds