# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_NCOA2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/NCOA2.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/NCOA2.fasta (Sat Feb 12 18:00:07 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.316 C 0.174 G 0.185 T 0.325


MOTIF ATATTATA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATTATA   TATAATAT         31         10   4.5e-004   9.7e-001
#         ATATTATA   TATAATAT         31         10   4.5e-004   9.7e-001

letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 9.7e-001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACATATTA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACATATTA   TAATATGT          6          0   1.5e-002   3.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACTGAAGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTGAAGA   TCTTCAGT          5          0   3.1e-002   6.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTCCCTTA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTCCCTTA   TAAGGGAC          5          0   3.1e-002   6.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.3e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTTATATA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTTATATA   TATATAAC          5          0   3.1e-002   6.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 6.3e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.85 seconds