# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_NBN/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/NBN.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/NBN.fasta (Sat Feb 12 18:00:06 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n12.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.209 C 0.287 G 0.301 T 0.203


MOTIF GACGTCAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GACGTCAC   GTGACGTC         22          0   1.5e-007   4.0e-004
#         GACGTCAC   GTGACGTC         22          0   1.5e-007   4.0e-004

letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.0e-004
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCCTAACC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCTAACC   GGTTAGGG          6          0   1.5e-002   3.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.9e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CACAAGGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACAAGGG   CCCTTGTG          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGGCGCGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGCGCGC   GCGCGCCT          5          1   1.1e-001   2.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.8e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAGTGCTG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGTGCTG   CAGCACTT          3          0   1.2e-001   3.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.75 seconds