# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_MYNN/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/MYNN.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/MYNN.fasta (Sat Feb 12 18:00:06 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:09 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.270 C 0.235 G 0.214 T 0.281


MOTIF ATAARAGY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAARAGY   RCTYTTAT         42          0   3.5e-014   8.9e-011
#         ATAAGAGT   ACTCTTAT         13          0   1.0e-004   2.7e-001
#         ATAAAAGT   ACTTTTAT         11          0   4.4e-004   1.1e+000
#         ATAAAAGC   GCTTTTAT         10          0   8.9e-004   2.3e+000
#         ATAAGAGC   GCTCTTAT          8          0   3.7e-003   9.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 8.9e-011
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.500000 0.000000 0.500000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.428571 0.000000 0.571429


MOTIF TATTTTGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATTTTGA   TCAAAATA         10          1   5.4e-003   1.3e+001
#         TATTTTGA   TCAAAATA         10          1   5.4e-003   1.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.3e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACTCTTAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTCTTAA   TTAAGAGT          9          1   1.0e-002   2.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TATTCTGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATTCTGA   TCAGAATA          5          0   3.1e-002   7.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.0e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACGGTTGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGGTTGC   GCAACCGT          4          0   6.2e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.08 seconds