# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_MTA3/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/MTA3.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/MTA3.fasta (Sat Feb 12 18:00:05 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.183 C 0.318 G 0.305 T 0.194


MOTIF GACGTCAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GACGTCAC   GTGACGTC          8          0   3.7e-003   1.0e+001
#         GACGTCAC   GTGACGTC          8          0   3.7e-003   1.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.0e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCCGCCCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCGCCCC   GGGGCGGG          6          0   1.5e-002   4.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.2e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGACAAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGACAAAA   TTTTGTCC          5          0   3.1e-002   8.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.4e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGCCGTAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCCGTAG   CTACGGCG          6          1   6.1e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.7e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACCAATCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCAATCA   TGATTGGT          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.74 seconds