# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_MTA2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/MTA2.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/MTA2.fasta (Sat Feb 12 18:00:05 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n12.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.233 C 0.268 G 0.298 T 0.201


MOTIF AGAAAGRA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAAAGRA   TYCTTTCT         18          1   2.9e-005   6.8e-002
#         AGAAAGGA   TCCTTTCT          8          0   3.7e-003   8.8e+000
#         AGAAAGAA   TTCTTTCT         10          1   5.4e-003   1.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 6.8e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.578947 0.000000 0.421053 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGAAGGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGAAGGAA   TTCCTTCC         12          2   5.9e-003   1.4e+001
#         GGAAGGAA   TTCCTTCC         12          2   5.9e-003   1.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.4e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATCATCTA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCATCTA   TAGATGAT          4          0   6.2e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCTCCCAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTCCCAC   GTGGGAGG          4          0   6.2e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTCCCTTC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCCCTTC   GAAGGGAG          4          0   6.2e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.71 seconds