# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_MTA1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/MTA1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/MTA1.fasta (Sat Feb 12 18:00:04 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.172 C 0.322 G 0.334 T 0.173


MOTIF GACGTCAY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GACGTCAY   RTGACGTC         17          0   5.8e-006   1.5e-002
#         GACGTCAC   GTGACGTC         15          0   2.5e-005   6.4e-002
#         GACGTCAT   ATGACGTC          8          0   3.7e-003   9.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.5e-002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.647059 0.000000 0.352941


MOTIF GCGCCGGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGCCGGA   TCCGGCGC          6          0   1.5e-002   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.8e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACGTCATC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGTCATC   GATGACGT          5          0   3.1e-002   7.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGCGACGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCGACGC   GCGTCGCG          5          0   3.1e-002   7.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.5e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGCGTCAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGCGTCAC   GTGACGCC          5          0   3.1e-002   7.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.4e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.68 seconds