# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_MIER1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/MIER1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/MIER1.fasta (Sat Feb 12 18:00:03 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.213 C 0.301 G 0.272 T 0.214


MOTIF GGACAGCD DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGACAGCD   HGCTGTCC         36          0   3.7e-012   9.7e-009
#         GGACAGCT   AGCTGTCC         18          0   2.8e-006   7.2e-003
#         GGACAGCA   TGCTGTCC          9          0   1.8e-003   4.7e+000
#         GGACAGCG   CGCTGTCC          9          0   1.8e-003   4.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 9.7e-009
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.250000 0.000000 0.250000 0.500000


MOTIF GGTGCTGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTGCTGA   TCAGCACC         21          0   3.1e-007   7.5e-004
#         GGTGCTGA   TCAGCACC         21          0   3.1e-007   7.5e-004

letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 7.5e-004
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTTGAAAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTGAAAC   GTTTCAAG          5          0   3.1e-002   7.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.2e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATGGACAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGGACAG   CTGTCCAT          6          1   6.1e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GAAACTGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAACTGC   GCAGTTTC          6          1   6.1e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.4e+002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.93 seconds