# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_MEF2D/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/MEF2D.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/MEF2D.fasta (Sat Feb 12 18:00:02 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.289 C 0.216 G 0.217 T 0.278


MOTIF TATTTWTA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATTTWTA   TAWAAATA         23          1   9.2e-007   2.6e-003
#         TATTTTTA   TAAAAATA         15          1   2.1e-004   6.1e-001
#         TATTTATA   TATAAATA          8          0   3.7e-003   1.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.6e-003
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.347826 0.000000 0.000000 0.652174
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAACCACA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACCACA   TGTGGTTT          6          0   1.5e-002   4.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.1e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATATAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATATAG   CTATATTT          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAACAGAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACAGAG   CTCTGTTT          3          0   1.2e-001   3.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAGATGGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGATGGA   TCCATCTT          3          0   1.2e-001   3.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.71 seconds