# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_MEF2A/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/MEF2A.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/MEF2A.fasta (Sat Feb 12 18:00:01 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.276 C 0.231 G 0.221 T 0.272


MOTIF AWAAATAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AWAAATAG   CTATTTWT         36          1   7.6e-011   2.1e-007
#         AAAAATAG   CTATTTTT         25          1   2.2e-007   6.2e-004
#         ATAAATAG   CTATTTAT         11          0   4.4e-004   1.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.1e-007
1.000000 0.000000 0.000000 0.000000
0.694444 0.000000 0.000000 0.305556
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATGAGTCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGAGTCA   TGACTCAT          7          0   7.5e-003   1.9e+001
#         ATGAGTCA   TGACTCAT          7          0   7.5e-003   1.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATATTTAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATTTAG   CTAAATAT          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF TAAAAATA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAAAATA   TATTTTTA          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAATAGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATAGC   GCTATTTT          3          0   1.2e-001   3.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.92 seconds