# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_MCM3/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/MCM3.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/MCM3.fasta (Sat Feb 12 18:00:00 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.240 C 0.245 G 0.260 T 0.255


MOTIF AGAGAGAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGAGAG   CTCTCTCT          5          0   3.1e-002   5.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACACACAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACACAC   GTGTGTGT        109         90   5.0e-002   9.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 161 E= 9.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CACACACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACACACA   TGTGTGTG          7          2   8.8e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.5e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACACCAGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACCAGG   CCTGGTGT          3          0   1.2e-001   2.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.2e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACATGCTC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACATGCTC   GAGCATGT          3          0   1.2e-001   2.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.1e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.52 seconds